Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7AK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7AK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7AK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7AK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77604669 total, 44339 skipped (flags/unmapped)
Fragments: 38912381 total (38616249 tlen-paired, 2682 hash-paired, 395 singletons, 10340 discordant, 282715 orphans, 9339 too large [>5000 bp], 13756305 duplicates)
Reads: 77709901 total, 47165 skipped (flags/unmapped)
Fragments: 38966642 total (38643729 tlen-paired, 3628 hash-paired, 299 singletons, 12293 discordant, 306693 orphans, 18222 too large [>5000 bp], 14155787 duplicates)
Reads: 72600252 total, 51014 skipped (flags/unmapped)
Fragments: 36402525 total (36111828 tlen-paired, 3273 hash-paired, 329 singletons, 14258 discordant, 272837 orphans, 8677 too large [>5000 bp], 13138780 duplicates)
Reads: 86008485 total, 73908 skipped (flags/unmapped)
Fragments: 43224339 total (42421421 tlen-paired, 3490 hash-paired, 314 singletons, 157479 discordant, 641635 orphans, 63924 too large [>5000 bp], 15695872 duplicates)