Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3XL-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3XL-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3XL-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3XL-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70540088 total, 50257 skipped (flags/unmapped)
Fragments: 35363359 total (35092543 tlen-paired, 2442 hash-paired, 354 singletons, 11539 discordant, 256481 orphans, 9974 too large [>5000 bp], 12547602 duplicates)
Reads: 76063793 total, 45134 skipped (flags/unmapped)
Fragments: 38135589 total (37849443 tlen-paired, 2939 hash-paired, 409 singletons, 8276 discordant, 274522 orphans, 11206 too large [>5000 bp], 13242272 duplicates)
Reads: 83039597 total, 48199 skipped (flags/unmapped)
Fragments: 41636771 total (41289156 tlen-paired, 3516 hash-paired, 326 singletons, 12247 discordant, 331526 orphans, 24854 too large [>5000 bp], 14797325 duplicates)
Reads: 83809499 total, 81108 skipped (flags/unmapped)
Fragments: 42123796 total (41316714 tlen-paired, 2804 hash-paired, 349 singletons, 156417 discordant, 647512 orphans, 64330 too large [>5000 bp], 14948456 duplicates)