Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6ES-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6ES-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6ES-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6ES-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71856914 total, 54183 skipped (flags/unmapped)
Fragments: 36024177 total (35739531 tlen-paired, 3585 hash-paired, 394 singletons, 15132 discordant, 265535 orphans, 10153 too large [>5000 bp], 12147686 duplicates)
Reads: 76326156 total, 47117 skipped (flags/unmapped)
Fragments: 38265440 total (37978731 tlen-paired, 3027 hash-paired, 347 singletons, 10787 discordant, 272548 orphans, 10527 too large [>5000 bp], 12712827 duplicates)
Reads: 84804774 total, 84331 skipped (flags/unmapped)
Fragments: 42607100 total (41852266 tlen-paired, 2061 hash-paired, 334 singletons, 142816 discordant, 609623 orphans, 58100 too large [>5000 bp], 14487924 duplicates)
Reads: 84270353 total, 51375 skipped (flags/unmapped)
Fragments: 42249191 total (41895318 tlen-paired, 3483 hash-paired, 292 singletons, 15838 discordant, 334260 orphans, 27574 too large [>5000 bp], 14353177 duplicates)