Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_0VK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_0VK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0VK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0VK-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 53293731 total, 38014 skipped (flags/unmapped)
Fragments: 26705750 total (26523794 tlen-paired, 2469 hash-paired, 238 singletons, 11482 discordant, 167767 orphans, 6111 too large [>5000 bp], 9017886 duplicates)
Reads: 57049269 total, 34928 skipped (flags/unmapped)
Fragments: 28588449 total (28379963 tlen-paired, 3414 hash-paired, 198 singletons, 9955 discordant, 194919 orphans, 16280 too large [>5000 bp], 9684014 duplicates)
Reads: 57391014 total, 32027 skipped (flags/unmapped)
Fragments: 28756523 total (28576969 tlen-paired, 2422 hash-paired, 300 singletons, 7989 discordant, 168843 orphans, 7542 too large [>5000 bp], 9487501 duplicates)
Reads: 62766645 total, 55799 skipped (flags/unmapped)
Fragments: 31496848 total (31063162 tlen-paired, 1868 hash-paired, 216 singletons, 81022 discordant, 350580 orphans, 33973 too large [>5000 bp], 10695993 duplicates)