Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3PB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3PB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3PB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3PB-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72333873 total, 60817 skipped (flags/unmapped)
Fragments: 36276253 total (35948674 tlen-paired, 4091 hash-paired, 390 singletons, 20844 discordant, 302254 orphans, 11597 too large [>5000 bp], 12548467 duplicates)
Reads: 77491253 total, 54916 skipped (flags/unmapped)
Fragments: 38865074 total (38507370 tlen-paired, 4003 hash-paired, 302 singletons, 17860 discordant, 335539 orphans, 21015 too large [>5000 bp], 13580061 duplicates)
Reads: 78596520 total, 51861 skipped (flags/unmapped)
Fragments: 39415208 total (39087518 tlen-paired, 4831 hash-paired, 426 singletons, 15120 discordant, 307313 orphans, 10991 too large [>5000 bp], 13322467 duplicates)
Reads: 85257797 total, 89560 skipped (flags/unmapped)
Fragments: 42840377 total (42054212 tlen-paired, 3519 hash-paired, 363 singletons, 148089 discordant, 634194 orphans, 61020 too large [>5000 bp], 14978468 duplicates)