Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_70J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_70J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_70J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_70J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82785571 total, 67270 skipped (flags/unmapped)
Fragments: 41530842 total (41137450 tlen-paired, 4458 hash-paired, 415 singletons, 20325 discordant, 368194 orphans, 12613 too large [>5000 bp], 15426835 duplicates)
Reads: 88295534 total, 54955 skipped (flags/unmapped)
Fragments: 44297909 total (43902657 tlen-paired, 3942 hash-paired, 445 singletons, 14229 discordant, 376636 orphans, 10921 too large [>5000 bp], 16192138 duplicates)
Reads: 98163983 total, 90966 skipped (flags/unmapped)
Fragments: 49384412 total (48323905 tlen-paired, 3120 hash-paired, 329 singletons, 200740 discordant, 856318 orphans, 80420 too large [>5000 bp], 18485396 duplicates)
Reads: 97437892 total, 62264 skipped (flags/unmapped)
Fragments: 48885969 total (48418406 tlen-paired, 7473 hash-paired, 370 singletons, 21208 discordant, 438512 orphans, 21286 too large [>5000 bp], 18292638 duplicates)