Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7VX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77380374 total, 56939 skipped (flags/unmapped)
Fragments: 38769562 total (38515355 tlen-paired, 3581 hash-paired, 332 singletons, 13723 discordant, 236571 orphans, 10607 too large [>5000 bp], 13254211 duplicates)
Reads: 82920303 total, 46138 skipped (flags/unmapped)
Fragments: 41547609 total (41295840 tlen-paired, 2795 hash-paired, 382 singletons, 9563 discordant, 239029 orphans, 9179 too large [>5000 bp], 13956531 duplicates)
Reads: 91318603 total, 80393 skipped (flags/unmapped)
Fragments: 45832755 total (45176628 tlen-paired, 2232 hash-paired, 313 singletons, 122225 discordant, 531357 orphans, 52185 too large [>5000 bp], 15782789 duplicates)
Reads: 91028787 total, 49646 skipped (flags/unmapped)
Fragments: 45613453 total (45304024 tlen-paired, 3165 hash-paired, 307 singletons, 14631 discordant, 291326 orphans, 21934 too large [>5000 bp], 15699848 duplicates)