Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1V9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1V9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1V9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1V9-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 94894180 total, 57328 skipped (flags/unmapped)
Fragments: 47550363 total (47246252 tlen-paired, 3722 hash-paired, 451 singletons, 12451 discordant, 287487 orphans, 12032 too large [>5000 bp], 17794356 duplicates)
Reads: 89142558 total, 67762 skipped (flags/unmapped)
Fragments: 44668334 total (44361607 tlen-paired, 3778 hash-paired, 432 singletons, 18109 discordant, 284408 orphans, 11484 too large [>5000 bp], 17006942 duplicates)
Reads: 105274497 total, 98913 skipped (flags/unmapped)
Fragments: 52838464 total (52068428 tlen-paired, 3908 hash-paired, 397 singletons, 143530 discordant, 622201 orphans, 60627 too large [>5000 bp], 20255942 duplicates)
Reads: 104744905 total, 63140 skipped (flags/unmapped)
Fragments: 52489169 total (52110783 tlen-paired, 3422 hash-paired, 330 singletons, 18751 discordant, 355883 orphans, 29820 too large [>5000 bp], 20094642 duplicates)