Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7CE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7CE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7CE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7CE-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78477893 total, 61201 skipped (flags/unmapped)
Fragments: 39320242 total (39054071 tlen-paired, 2576 hash-paired, 375 singletons, 16287 discordant, 246933 orphans, 11758 too large [>5000 bp], 13720465 duplicates)
Reads: 83966747 total, 53578 skipped (flags/unmapped)
Fragments: 42079931 total (41769293 tlen-paired, 3572 hash-paired, 335 singletons, 13849 discordant, 292882 orphans, 23262 too large [>5000 bp], 14856900 duplicates)
Reads: 86202786 total, 47808 skipped (flags/unmapped)
Fragments: 43195831 total (42922686 tlen-paired, 2827 hash-paired, 434 singletons, 12036 discordant, 257848 orphans, 10799 too large [>5000 bp], 14838207 duplicates)
Reads: 92491777 total, 86471 skipped (flags/unmapped)
Fragments: 46419017 total (45761918 tlen-paired, 2035 hash-paired, 378 singletons, 122898 discordant, 531788 orphans, 49719 too large [>5000 bp], 16424615 duplicates)