Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_IZG-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_IZG-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_IZG-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai


[W::hts_idx_load3] The index file is older than the data file: 1029_IZG-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75439921 total, 64043 skipped (flags/unmapped)
Fragments: 37822185 total (37504929 tlen-paired, 4162 hash-paired, 348 singletons, 20260 discordant, 292486 orphans, 12171 too large [>5000 bp], 13466762 duplicates)
Reads: 80761134 total, 56132 skipped (flags/unmapped)
Fragments: 40495659 total (40142257 tlen-paired, 3757 hash-paired, 315 singletons, 16981 discordant, 332349 orphans, 23174 too large [>5000 bp], 14535496 duplicates)
Reads: 81104819 total, 50938 skipped (flags/unmapped)
Fragments: 40665241 total (40350545 tlen-paired, 2497 hash-paired, 419 singletons, 14496 discordant, 297284 orphans, 10551 too large [>5000 bp], 14179472 duplicates)
Reads: 88727986 total, 88121 skipped (flags/unmapped)
Fragments: 44568658 total (43807491 tlen-paired, 3367 hash-paired, 317 singletons, 143235 discordant, 614248 orphans, 58557 too large [>5000 bp], 16024754 duplicates)