Count mode: frac
Count mode: frac
[W::hts_idx_load3] Count mode: frac
The index file is older than the data file: 1136_7OX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7OX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7OX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7OX-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74908074 total, 64003 skipped (flags/unmapped)
Fragments: 37602465 total (37200613 tlen-paired, 2956 hash-paired, 382 singletons, 16069 discordant, 382445 orphans, 10984 too large [>5000 bp], 14600390 duplicates)
Reads: 80158124 total, 55548 skipped (flags/unmapped)
Fragments: 40241523 total (39824692 tlen-paired, 2498 hash-paired, 400 singletons, 10901 discordant, 403032 orphans, 11481 too large [>5000 bp], 15268972 duplicates)
Reads: 89207244 total, 106187 skipped (flags/unmapped)
Fragments: 44946363 total (43718110 tlen-paired, 2695 hash-paired, 345 singletons, 239843 discordant, 985370 orphans, 97023 too large [>5000 bp], 17482351 duplicates)
Reads: 88304059 total, 63063 skipped (flags/unmapped)
Fragments: 44329992 total (43832748 tlen-paired, 5196 hash-paired, 330 singletons, 16840 discordant, 474878 orphans, 28110 too large [>5000 bp], 17357693 duplicates)