Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3J-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65940730 total, 49335 skipped (flags/unmapped)
Fragments: 33066116 total (32790160 tlen-paired, 2949 hash-paired, 356 singletons, 12230 discordant, 260421 orphans, 9970 too large [>5000 bp], 10818154 duplicates)
Reads: 71320311 total, 40118 skipped (flags/unmapped)
Fragments: 35768888 total (35484837 tlen-paired, 2642 hash-paired, 337 singletons, 8546 discordant, 272526 orphans, 7640 too large [>5000 bp], 11489593 duplicates)
Reads: 78289356 total, 75090 skipped (flags/unmapped)
Fragments: 39366790 total (38566853 tlen-paired, 3210 hash-paired, 273 singletons, 153101 discordant, 643353 orphans, 62156 too large [>5000 bp], 12958481 duplicates)
Reads: 77840614 total, 45930 skipped (flags/unmapped)
Fragments: 39040027 total (38706367 tlen-paired, 4309 hash-paired, 248 singletons, 12699 discordant, 316404 orphans, 15641 too large [>5000 bp], 12860391 duplicates)