Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5PH-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5PH-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5PH-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5PH-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68986957 total, 68445 skipped (flags/unmapped)
Fragments: 34690864 total (34182100 tlen-paired, 3799 hash-paired, 454 singletons, 15011 discordant, 489500 orphans, 13369 too large [>5000 bp], 14084760 duplicates)
Reads: 73927221 total, 55714 skipped (flags/unmapped)
Fragments: 37185756 total (36650459 tlen-paired, 2140 hash-paired, 433 singletons, 10400 discordant, 522324 orphans, 11376 too large [>5000 bp], 14798750 duplicates)
Reads: 81473466 total, 63285 skipped (flags/unmapped)
Fragments: 40984560 total (40358371 tlen-paired, 6134 hash-paired, 331 singletons, 15012 discordant, 604712 orphans, 23052 too large [>5000 bp], 16708905 duplicates)
Reads: 83112930 total, 107616 skipped (flags/unmapped)
Fragments: 42050193 total (40339186 tlen-paired, 2253 hash-paired, 388 singletons, 340834 discordant, 1367532 orphans, 136424 too large [>5000 bp], 16929545 duplicates)