Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4XV-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4XV-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4XV-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4XV-N1-BDNA-1_A23NLN3LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86905601 total, 62815 skipped (flags/unmapped)
Fragments: 43536543 total (43257525 tlen-paired, 3518 hash-paired, 440 singletons, 14486 discordant, 260574 orphans, 15357 too large [>5000 bp], 15158496 duplicates)
Reads: 94035762 total, 49568 skipped (flags/unmapped)
Fragments: 47118599 total (46834740 tlen-paired, 3001 hash-paired, 411 singletons, 10596 discordant, 269851 orphans, 9629 too large [>5000 bp], 16082791 duplicates)
Reads: 93533462 total, 57370 skipped (flags/unmapped)
Fragments: 46866650 total (46560352 tlen-paired, 6832 hash-paired, 367 singletons, 12570 discordant, 286529 orphans, 14844 too large [>5000 bp], 16403117 duplicates)
Reads: 103124820 total, 87419 skipped (flags/unmapped)
Fragments: 51756648 total (51017402 tlen-paired, 2302 hash-paired, 378 singletons, 143449 discordant, 593117 orphans, 58800 too large [>5000 bp], 18132687 duplicates)