Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_2QO-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_2QO-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2QO-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2QO-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71057175 total, 46568 skipped (flags/unmapped)
Fragments: 35597384 total (35383157 tlen-paired, 2278 hash-paired, 331 singletons, 10224 discordant, 201394 orphans, 8782 too large [>5000 bp], 9140425 duplicates)
Reads: 76667712 total, 40708 skipped (flags/unmapped)
Fragments: 38409799 total (38192145 tlen-paired, 2695 hash-paired, 388 singletons, 7385 discordant, 207186 orphans, 7490 too large [>5000 bp], 9699660 duplicates)
Reads: 76007433 total, 40660 skipped (flags/unmapped)
Fragments: 38083907 total (37835575 tlen-paired, 2731 hash-paired, 280 singletons, 9070 discordant, 236251 orphans, 17745 too large [>5000 bp], 9934334 duplicates)
Reads: 83901354 total, 75865 skipped (flags/unmapped)
Fragments: 42100853 total (41510666 tlen-paired, 2870 hash-paired, 396 singletons, 115090 discordant, 471831 orphans, 48005 too large [>5000 bp], 10980565 duplicates)