Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4B7-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4B7-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4B7-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4B7-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90455856 total, 60168 skipped (flags/unmapped)
Fragments: 45309175 total (45051155 tlen-paired, 4566 hash-paired, 383 singletons, 12928 discordant, 240143 orphans, 8932 too large [>5000 bp], 11830745 duplicates)
Reads: 97157394 total, 55025 skipped (flags/unmapped)
Fragments: 48669452 total (48378028 tlen-paired, 4195 hash-paired, 355 singletons, 11396 discordant, 275478 orphans, 19649 too large [>5000 bp], 13041833 duplicates)
Reads: 98241717 total, 49246 skipped (flags/unmapped)
Fragments: 49210578 total (48953697 tlen-paired, 2479 hash-paired, 442 singletons, 9163 discordant, 244797 orphans, 8277 too large [>5000 bp], 12710499 duplicates)
Reads: 107347901 total, 86786 skipped (flags/unmapped)
Fragments: 53852996 total (53160470 tlen-paired, 2401 hash-paired, 457 singletons, 133480 discordant, 556188 orphans, 55884 too large [>5000 bp], 14429292 duplicates)