Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7PY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7PY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7PY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7PY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 34216981 total, 25038 skipped (flags/unmapped)
Fragments: 17168120 total (17012582 tlen-paired, 1621 hash-paired, 115 singletons, 3512 discordant, 150290 orphans, 3054 too large [>5000 bp], 4582297 duplicates)
Reads: 37606900 total, 21266 skipped (flags/unmapped)
Fragments: 18870071 total (18703571 tlen-paired, 1047 hash-paired, 194 singletons, 2733 discordant, 162526 orphans, 4106 too large [>5000 bp], 4874135 duplicates)
Reads: 37246137 total, 21927 skipped (flags/unmapped)
Fragments: 18692283 total (18507418 tlen-paired, 1301 hash-paired, 102 singletons, 3436 discordant, 180026 orphans, 9886 too large [>5000 bp], 4995488 duplicates)
Reads: 41487938 total, 42618 skipped (flags/unmapped)
Fragments: 20888130 total (20356310 tlen-paired, 1411 hash-paired, 184 singletons, 109001 discordant, 421224 orphans, 45234 too large [>5000 bp], 5551479 duplicates)