Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_33Q-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_33Q-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_33Q-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_33Q-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64901898 total, 52550 skipped (flags/unmapped)
Fragments: 32551763 total (32272552 tlen-paired, 2888 hash-paired, 341 singletons, 9325 discordant, 266657 orphans, 6410 too large [>5000 bp], 8656755 duplicates)
Reads: 70235650 total, 46645 skipped (flags/unmapped)
Fragments: 35228499 total (34935258 tlen-paired, 2055 hash-paired, 336 singletons, 7315 discordant, 283535 orphans, 7939 too large [>5000 bp], 9120910 duplicates)
Reads: 69842706 total, 48665 skipped (flags/unmapped)
Fragments: 35032302 total (34710584 tlen-paired, 3225 hash-paired, 221 singletons, 8904 discordant, 309368 orphans, 19513 too large [>5000 bp], 9432125 duplicates)
Reads: 77497479 total, 81058 skipped (flags/unmapped)
Fragments: 38983603 total (38107996 tlen-paired, 3109 hash-paired, 398 singletons, 175605 discordant, 696495 orphans, 73054 too large [>5000 bp], 10475238 duplicates)