Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_CQ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CQ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CQ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_CQ-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63405285 total, 48119 skipped (flags/unmapped)
Fragments: 31787364 total (31544864 tlen-paired, 2565 hash-paired, 292 singletons, 7569 discordant, 232074 orphans, 7402 too large [>5000 bp], 8658772 duplicates)
Reads: 68809324 total, 41920 skipped (flags/unmapped)
Fragments: 34503347 total (34240902 tlen-paired, 2836 hash-paired, 334 singletons, 5313 discordant, 253962 orphans, 7503 too large [>5000 bp], 9233049 duplicates)
Reads: 75430339 total, 44017 skipped (flags/unmapped)
Fragments: 37823296 total (37536825 tlen-paired, 2285 hash-paired, 278 singletons, 7590 discordant, 276318 orphans, 8163 too large [>5000 bp], 10463328 duplicates)
Reads: 76137133 total, 72553 skipped (flags/unmapped)
Fragments: 38293509 total (37481638 tlen-paired, 2640 hash-paired, 340 singletons, 159979 discordant, 648912 orphans, 63407 too large [>5000 bp], 10544567 duplicates)