Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_1GT-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_1GT-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1GT-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1GT-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64371876 total, 52562 skipped (flags/unmapped)
Fragments: 32257986 total (32032248 tlen-paired, 2538 hash-paired, 304 singletons, 9384 discordant, 213512 orphans, 8579 too large [>5000 bp], 10077659 duplicates)
Reads: 69570461 total, 41665 skipped (flags/unmapped)
Fragments: 34868558 total (34637342 tlen-paired, 1975 hash-paired, 350 singletons, 6359 discordant, 222532 orphans, 7281 too large [>5000 bp], 10667752 duplicates)
Reads: 69656547 total, 44897 skipped (flags/unmapped)
Fragments: 34915777 total (34668671 tlen-paired, 3405 hash-paired, 219 singletons, 8081 discordant, 235401 orphans, 7858 too large [>5000 bp], 11005997 duplicates)
Reads: 76900744 total, 75443 skipped (flags/unmapped)
Fragments: 38623754 total (37957883 tlen-paired, 1836 hash-paired, 382 singletons, 131452 discordant, 532201 orphans, 55188 too large [>5000 bp], 12184791 duplicates)