Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_IR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_IR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_IR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_IR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 101929434 total, 65908 skipped (flags/unmapped)
Fragments: 51053008 total (50776551 tlen-paired, 4599 hash-paired, 357 singletons, 12516 discordant, 258985 orphans, 8426 too large [>5000 bp], 12569923 duplicates)
Reads: 111256771 total, 57532 skipped (flags/unmapped)
Fragments: 55722521 total (55438525 tlen-paired, 5044 hash-paired, 427 singletons, 9431 discordant, 269094 orphans, 11859 too large [>5000 bp], 13616331 duplicates)
Reads: 109207835 total, 54969 skipped (flags/unmapped)
Fragments: 54706509 total (54378211 tlen-paired, 2757 hash-paired, 332 singletons, 10673 discordant, 314536 orphans, 27358 too large [>5000 bp], 13823727 duplicates)
Reads: 120982210 total, 102857 skipped (flags/unmapped)
Fragments: 60683538 total (59909866 tlen-paired, 3861 hash-paired, 482 singletons, 150668 discordant, 618661 orphans, 65710 too large [>5000 bp], 15343805 duplicates)