Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BR2G-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BR2G-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BR2G-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BR2G-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63069736 total, 37106 skipped (flags/unmapped)
Fragments: 31589964 total (31423091 tlen-paired, 2037 hash-paired, 296 singletons, 5096 discordant, 159444 orphans, 6221 too large [>5000 bp], 8739874 duplicates)
Reads: 59601726 total, 45648 skipped (flags/unmapped)
Fragments: 29850189 total (29682761 tlen-paired, 2345 hash-paired, 247 singletons, 7815 discordant, 157021 orphans, 6484 too large [>5000 bp], 8390446 duplicates)
Reads: 69931008 total, 42036 skipped (flags/unmapped)
Fragments: 35031256 total (34812777 tlen-paired, 2833 hash-paired, 197 singletons, 8036 discordant, 207413 orphans, 17035 too large [>5000 bp], 9945798 duplicates)
Reads: 70341485 total, 67420 skipped (flags/unmapped)
Fragments: 35289433 total (34818246 tlen-paired, 2028 hash-paired, 293 singletons, 89298 discordant, 379568 orphans, 37530 too large [>5000 bp], 10042295 duplicates)