Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_02T-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02T-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02T-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_02T-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72109758 total, 49100 skipped (flags/unmapped)
Fragments: 36142759 total (35890528 tlen-paired, 3062 hash-paired, 258 singletons, 10127 discordant, 238784 orphans, 7091 too large [>5000 bp], 9584122 duplicates)
Reads: 77317613 total, 43161 skipped (flags/unmapped)
Fragments: 38758917 total (38470389 tlen-paired, 4269 hash-paired, 274 singletons, 9091 discordant, 274894 orphans, 15893 too large [>5000 bp], 10448506 duplicates)
Reads: 78148933 total, 42075 skipped (flags/unmapped)
Fragments: 39172125 total (38910402 tlen-paired, 2018 hash-paired, 389 singletons, 7605 discordant, 251711 orphans, 7354 too large [>5000 bp], 10157169 duplicates)
Reads: 85506748 total, 77863 skipped (flags/unmapped)
Fragments: 42953262 total (42201302 tlen-paired, 2861 hash-paired, 414 singletons, 148276 discordant, 600409 orphans, 61592 too large [>5000 bp], 11572874 duplicates)