Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3PM-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3PM-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3PM-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3PM-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82557969 total, 62827 skipped (flags/unmapped)
Fragments: 41346363 total (41115651 tlen-paired, 3757 hash-paired, 353 singletons, 12361 discordant, 214241 orphans, 8505 too large [>5000 bp], 12665632 duplicates)
Reads: 88379442 total, 50657 skipped (flags/unmapped)
Fragments: 44263574 total (44037689 tlen-paired, 3073 hash-paired, 380 singletons, 8225 discordant, 214207 orphans, 8112 too large [>5000 bp], 13459401 duplicates)
Reads: 97812107 total, 56345 skipped (flags/unmapped)
Fragments: 48990098 total (48720412 tlen-paired, 4107 hash-paired, 303 singletons, 12105 discordant, 253171 orphans, 14520 too large [>5000 bp], 15264824 duplicates)
Reads: 98087004 total, 94093 skipped (flags/unmapped)
Fragments: 49192810 total (48586166 tlen-paired, 2492 hash-paired, 370 singletons, 114089 discordant, 489693 orphans, 48677 too large [>5000 bp], 15364724 duplicates)