Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0NS-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0NS-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0NS-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0NS-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78345390 total, 49859 skipped (flags/unmapped)
Fragments: 39232170 total (39033749 tlen-paired, 3160 hash-paired, 303 singletons, 10280 discordant, 184678 orphans, 8086 too large [>5000 bp], 9223024 duplicates)
Reads: 83853347 total, 43753 skipped (flags/unmapped)
Fragments: 41994160 total (41777949 tlen-paired, 3382 hash-paired, 281 singletons, 8593 discordant, 203955 orphans, 12755 too large [>5000 bp], 10071037 duplicates)
Reads: 84900393 total, 40821 skipped (flags/unmapped)
Fragments: 42517831 total (42317707 tlen-paired, 2630 hash-paired, 377 singletons, 7710 discordant, 189407 orphans, 6847 too large [>5000 bp], 9879022 duplicates)
Reads: 92661618 total, 71716 skipped (flags/unmapped)
Fragments: 46461822 total (45936936 tlen-paired, 3185 hash-paired, 395 singletons, 100997 discordant, 420309 orphans, 43481 too large [>5000 bp], 11144444 duplicates)