Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6BB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6BB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6BB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6BB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73330571 total, 58420 skipped (flags/unmapped)
Fragments: 36754171 total (36485889 tlen-paired, 3938 hash-paired, 321 singletons, 11051 discordant, 252972 orphans, 8551 too large [>5000 bp], 11997713 duplicates)
Reads: 87037551 total, 50228 skipped (flags/unmapped)
Fragments: 43633092 total (43295997 tlen-paired, 2834 hash-paired, 239 singletons, 11054 discordant, 322968 orphans, 22173 too large [>5000 bp], 14385485 duplicates)
Reads: 78507522 total, 46167 skipped (flags/unmapped)
Fragments: 39352552 total (39082576 tlen-paired, 2394 hash-paired, 302 singletons, 7299 discordant, 259981 orphans, 8267 too large [>5000 bp], 12624567 duplicates)
Reads: 88195061 total, 88980 skipped (flags/unmapped)
Fragments: 44306871 total (43513629 tlen-paired, 2104 hash-paired, 367 singletons, 153561 discordant, 637210 orphans, 64958 too large [>5000 bp], 14581528 duplicates)