Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BMAA-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BMAA-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BMAA-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BMAA-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86551662 total, 57141 skipped (flags/unmapped)
Fragments: 43351436 total (43106965 tlen-paired, 3503 hash-paired, 372 singletons, 11221 discordant, 229375 orphans, 10698 too large [>5000 bp], 10907084 duplicates)
Reads: 93756915 total, 48644 skipped (flags/unmapped)
Fragments: 46962804 total (46715530 tlen-paired, 4447 hash-paired, 439 singletons, 8088 discordant, 234300 orphans, 8701 too large [>5000 bp], 11656545 duplicates)
Reads: 101757523 total, 51226 skipped (flags/unmapped)
Fragments: 50975954 total (50676722 tlen-paired, 3916 hash-paired, 331 singletons, 12015 discordant, 282970 orphans, 18845 too large [>5000 bp], 13054895 duplicates)
Reads: 102143236 total, 79817 skipped (flags/unmapped)
Fragments: 51253256 total (50569521 tlen-paired, 2862 hash-paired, 471 singletons, 129358 discordant, 551044 orphans, 54211 too large [>5000 bp], 13162145 duplicates)