Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0DK-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0DK-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0DK-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0DK-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 45466555 total, 31152 skipped (flags/unmapped)
Fragments: 22786067 total (22631015 tlen-paired, 2310 hash-paired, 178 singletons, 5603 discordant, 146961 orphans, 5204 too large [>5000 bp], 6041836 duplicates)
Reads: 49197850 total, 26200 skipped (flags/unmapped)
Fragments: 24657654 total (24499385 tlen-paired, 1413 hash-paired, 208 singletons, 3924 discordant, 152724 orphans, 4637 too large [>5000 bp], 6396493 duplicates)
Reads: 53727017 total, 27612 skipped (flags/unmapped)
Fragments: 26929629 total (26739431 tlen-paired, 2848 hash-paired, 168 singletons, 5577 discordant, 181605 orphans, 10960 too large [>5000 bp], 7184412 duplicates)
Reads: 54285931 total, 44704 skipped (flags/unmapped)
Fragments: 27274992 total (26793650 tlen-paired, 1335 hash-paired, 231 singletons, 93828 discordant, 385948 orphans, 38711 too large [>5000 bp], 7278401 duplicates)