Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BC2W-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BC2W-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BC2W-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BC2W-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70535049 total, 41184 skipped (flags/unmapped)
Fragments: 35318930 total (35151494 tlen-paired, 2652 hash-paired, 261 singletons, 5705 discordant, 158818 orphans, 7542 too large [>5000 bp], 9779222 duplicates)
Reads: 65420282 total, 51444 skipped (flags/unmapped)
Fragments: 32754516 total (32585864 tlen-paired, 2514 hash-paired, 284 singletons, 8700 discordant, 157154 orphans, 8622 too large [>5000 bp], 9187402 duplicates)
Reads: 77541517 total, 71398 skipped (flags/unmapped)
Fragments: 38879949 total (38434500 tlen-paired, 2569 hash-paired, 285 singletons, 83333 discordant, 359262 orphans, 34884 too large [>5000 bp], 11069403 duplicates)
Reads: 77111456 total, 47026 skipped (flags/unmapped)
Fragments: 38618616 total (38397760 tlen-paired, 4925 hash-paired, 237 singletons, 9045 discordant, 206649 orphans, 17042 too large [>5000 bp], 10978288 duplicates)