Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_4Z0-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1136_4Z0-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_4Z0-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4Z0-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 35161885 total, 29173 skipped (flags/unmapped)
Fragments: 17614344 total (17502626 tlen-paired, 1346 hash-paired, 149 singletons, 5040 discordant, 105183 orphans, 4678 too large [>5000 bp], 4720333 duplicates)
Reads: 37941138 total, 25502 skipped (flags/unmapped)
Fragments: 19012396 total (18878624 tlen-paired, 1645 hash-paired, 157 singletons, 4753 discordant, 127217 orphans, 9109 too large [>5000 bp], 5105119 duplicates)
Reads: 37714038 total, 23484 skipped (flags/unmapped)
Fragments: 18895463 total (18783014 tlen-paired, 1300 hash-paired, 150 singletons, 3711 discordant, 107288 orphans, 3533 too large [>5000 bp], 4959589 duplicates)
Reads: 41807129 total, 43052 skipped (flags/unmapped)
Fragments: 20982004 total (20667846 tlen-paired, 1723 hash-paired, 171 singletons, 61674 discordant, 250590 orphans, 25415 too large [>5000 bp], 5639779 duplicates)