Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BEA3-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BEA3-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BEA3-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BEA3-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84418662 total, 57516 skipped (flags/unmapped)
Fragments: 42296103 total (42031858 tlen-paired, 3215 hash-paired, 390 singletons, 12084 discordant, 248556 orphans, 8943 too large [>5000 bp], 10843948 duplicates)
Reads: 91813626 total, 49486 skipped (flags/unmapped)
Fragments: 46001656 total (45732196 tlen-paired, 3099 hash-paired, 463 singletons, 8569 discordant, 257329 orphans, 9310 too large [>5000 bp], 11744950 duplicates)
Reads: 100355095 total, 84631 skipped (flags/unmapped)
Fragments: 50378725 total (49624637 tlen-paired, 2207 hash-paired, 398 singletons, 144599 discordant, 606884 orphans, 60148 too large [>5000 bp], 13259142 duplicates)
Reads: 99418574 total, 50708 skipped (flags/unmapped)
Fragments: 49822709 total (49490011 tlen-paired, 2983 hash-paired, 328 singletons, 12869 discordant, 316518 orphans, 19647 too large [>5000 bp], 13096822 duplicates)