Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3FD-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_3FD-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3FD-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3FD-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63884592 total, 43584 skipped (flags/unmapped)
Fragments: 32035363 total (31780071 tlen-paired, 3450 hash-paired, 293 singletons, 8616 discordant, 242933 orphans, 6754 too large [>5000 bp], 8411809 duplicates)
Reads: 69017544 total, 38606 skipped (flags/unmapped)
Fragments: 34611096 total (34344601 tlen-paired, 2764 hash-paired, 417 singletons, 6087 discordant, 257227 orphans, 7195 too large [>5000 bp], 8918171 duplicates)
Reads: 75366607 total, 39538 skipped (flags/unmapped)
Fragments: 37797537 total (37506169 tlen-paired, 2696 hash-paired, 268 singletons, 8779 discordant, 279625 orphans, 5944 too large [>5000 bp], 10079989 duplicates)
Reads: 76508418 total, 69861 skipped (flags/unmapped)
Fragments: 38479045 total (37667607 tlen-paired, 2460 hash-paired, 348 singletons, 159795 discordant, 648835 orphans, 64825 too large [>5000 bp], 10201270 duplicates)