Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BCT5-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BCT5-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCT5-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCT5-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87425281 total, 56956 skipped (flags/unmapped)
Fragments: 43801588 total (43531200 tlen-paired, 4638 hash-paired, 357 singletons, 12649 discordant, 252744 orphans, 9125 too large [>5000 bp], 11694515 duplicates)
Reads: 98682525 total, 50134 skipped (flags/unmapped)
Fragments: 49441356 total (49159445 tlen-paired, 3367 hash-paired, 415 singletons, 9647 discordant, 268482 orphans, 9288 too large [>5000 bp], 13032133 duplicates)
Reads: 102756408 total, 51170 skipped (flags/unmapped)
Fragments: 51492417 total (51153235 tlen-paired, 4928 hash-paired, 330 singletons, 13412 discordant, 320512 orphans, 20623 too large [>5000 bp], 14002389 duplicates)
Reads: 103699416 total, 84378 skipped (flags/unmapped)
Fragments: 52054617 total (51293084 tlen-paired, 3530 hash-paired, 388 singletons, 143215 discordant, 614400 orphans, 60296 too large [>5000 bp], 14171903 duplicates)