Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4QW-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4QW-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4QW-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4QW-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67765657 total, 44571 skipped (flags/unmapped)
Fragments: 33943051 total (33754048 tlen-paired, 3307 hash-paired, 296 singletons, 9216 discordant, 176184 orphans, 5732 too large [>5000 bp], 7786141 duplicates)
Reads: 73145807 total, 36752 skipped (flags/unmapped)
Fragments: 36638608 total (36448556 tlen-paired, 2705 hash-paired, 351 singletons, 6598 discordant, 180398 orphans, 6294 too large [>5000 bp], 8291036 duplicates)
Reads: 79462864 total, 40953 skipped (flags/unmapped)
Fragments: 39808688 total (39575590 tlen-paired, 4183 hash-paired, 263 singletons, 9672 discordant, 218980 orphans, 11889 too large [>5000 bp], 9294805 duplicates)
Reads: 80041877 total, 67906 skipped (flags/unmapped)
Fragments: 40154791 total (39630918 tlen-paired, 2954 hash-paired, 351 singletons, 99230 discordant, 421338 orphans, 43039 too large [>5000 bp], 9397368 duplicates)