Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_7UR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_7UR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_7UR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7UR-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85421146 total, 56205 skipped (flags/unmapped)
Fragments: 42794980 total (42539394 tlen-paired, 2826 hash-paired, 341 singletons, 12219 discordant, 240200 orphans, 7761 too large [>5000 bp], 11952154 duplicates)
Reads: 92845005 total, 47849 skipped (flags/unmapped)
Fragments: 46515739 total (46254093 tlen-paired, 3282 hash-paired, 354 singletons, 8478 discordant, 249532 orphans, 7782 too large [>5000 bp], 12920105 duplicates)
Reads: 101032023 total, 51868 skipped (flags/unmapped)
Fragments: 50623794 total (50299259 tlen-paired, 5928 hash-paired, 309 singletons, 13004 discordant, 305294 orphans, 19085 too large [>5000 bp], 14423952 duplicates)
Reads: 101706641 total, 87445 skipped (flags/unmapped)
Fragments: 51044024 total (50316607 tlen-paired, 3984 hash-paired, 377 singletons, 137997 discordant, 585059 orphans, 58292 too large [>5000 bp], 14554340 duplicates)