Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BOLC-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOLC-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOLC-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOLC-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71443983 total, 54508 skipped (flags/unmapped)
Fragments: 35823422 total (35533513 tlen-paired, 3652 hash-paired, 340 singletons, 9592 discordant, 276325 orphans, 9648 too large [>5000 bp], 9383407 duplicates)
Reads: 76696995 total, 47037 skipped (flags/unmapped)
Fragments: 38461093 total (38161024 tlen-paired, 3228 hash-paired, 367 singletons, 6759 discordant, 289715 orphans, 8927 too large [>5000 bp], 9894259 duplicates)
Reads: 83928228 total, 48886 skipped (flags/unmapped)
Fragments: 42095194 total (41731708 tlen-paired, 4455 hash-paired, 298 singletons, 10115 discordant, 348618 orphans, 18935 too large [>5000 bp], 11204526 duplicates)
Reads: 85326959 total, 83242 skipped (flags/unmapped)
Fragments: 42916501 total (41990914 tlen-paired, 3614 hash-paired, 416 singletons, 181714 discordant, 739843 orphans, 75487 too large [>5000 bp], 11379898 duplicates)