Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_MY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_MY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_MY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_MY-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64935638 total, 52640 skipped (flags/unmapped)
Fragments: 32526202 total (32329377 tlen-paired, 2443 hash-paired, 245 singletons, 8314 discordant, 185823 orphans, 8331 too large [>5000 bp], 9048085 duplicates)
Reads: 69685890 total, 40621 skipped (flags/unmapped)
Fragments: 34913149 total (34712385 tlen-paired, 2463 hash-paired, 290 singletons, 5596 discordant, 192415 orphans, 5838 too large [>5000 bp], 9564175 duplicates)
Reads: 77375624 total, 76741 skipped (flags/unmapped)
Fragments: 38835457 total (38255722 tlen-paired, 2141 hash-paired, 261 singletons, 111243 discordant, 466090 orphans, 47160 too large [>5000 bp], 10958560 duplicates)
Reads: 76565767 total, 46520 skipped (flags/unmapped)
Fragments: 38361827 total (38112851 tlen-paired, 3099 hash-paired, 250 singletons, 8450 discordant, 237177 orphans, 16510 too large [>5000 bp], 10814842 duplicates)