Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1047_E4-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_E4-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1047_E4-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai[W::hts_idx_load3] 
The index file is older than the data file: 1047_E4-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73573967 total, 58532 skipped (flags/unmapped)
Fragments: 36856591 total (36626062 tlen-paired, 3137 hash-paired, 342 singletons, 11441 discordant, 215609 orphans, 9102 too large [>5000 bp], 11313666 duplicates)
Reads: 78931580 total, 46733 skipped (flags/unmapped)
Fragments: 39546173 total (39314396 tlen-paired, 2024 hash-paired, 379 singletons, 8034 discordant, 221340 orphans, 7110 too large [>5000 bp], 11976415 duplicates)
Reads: 79421598 total, 51477 skipped (flags/unmapped)
Fragments: 39793553 total (39526820 tlen-paired, 2849 hash-paired, 261 singletons, 9845 discordant, 253778 orphans, 18527 too large [>5000 bp], 12374509 duplicates)
Reads: 87795270 total, 88159 skipped (flags/unmapped)
Fragments: 44054451 total (43424106 tlen-paired, 2730 hash-paired, 366 singletons, 123356 discordant, 503893 orphans, 51234 too large [>5000 bp], 13712684 duplicates)