Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4DL-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4DL-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4DL-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4DL-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 46539900 total, 40681 skipped (flags/unmapped)
Fragments: 23325785 total (23149367 tlen-paired, 2225 hash-paired, 216 singletons, 7328 discordant, 166649 orphans, 7257 too large [>5000 bp], 5561733 duplicates)
Reads: 50563887 total, 34431 skipped (flags/unmapped)
Fragments: 25347247 total (25162261 tlen-paired, 2158 hash-paired, 264 singletons, 5544 discordant, 177020 orphans, 6123 too large [>5000 bp], 5882839 duplicates)
Reads: 49746134 total, 33487 skipped (flags/unmapped)
Fragments: 24941815 total (24746902 tlen-paired, 3149 hash-paired, 184 singletons, 6381 discordant, 185199 orphans, 7200 too large [>5000 bp], 6017627 duplicates)
Reads: 55054672 total, 55183 skipped (flags/unmapped)
Fragments: 27665556 total (27145823 tlen-paired, 1789 hash-paired, 263 singletons, 102787 discordant, 414894 orphans, 41767 too large [>5000 bp], 6658078 duplicates)