Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_G6U-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_G6U-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1029_G6U-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_G6U-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 44819406 total, 34126 skipped (flags/unmapped)
Fragments: 22455432 total (22309597 tlen-paired, 1569 hash-paired, 193 singletons, 7250 discordant, 136823 orphans, 5716 too large [>5000 bp], 6833041 duplicates)
Reads: 47392577 total, 29118 skipped (flags/unmapped)
Fragments: 23745576 total (23601879 tlen-paired, 1679 hash-paired, 204 singletons, 4701 discordant, 137113 orphans, 4812 too large [>5000 bp], 7059895 duplicates)
Reads: 52770275 total, 31769 skipped (flags/unmapped)
Fragments: 26443647 total (26266069 tlen-paired, 1577 hash-paired, 195 singletons, 7231 discordant, 168575 orphans, 9991 too large [>5000 bp], 8058236 duplicates)
Reads: 53041887 total, 51727 skipped (flags/unmapped)
Fragments: 26624926 total (26220677 tlen-paired, 1761 hash-paired, 229 singletons, 76402 discordant, 325857 orphans, 33197 too large [>5000 bp], 8125951 duplicates)