Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_SPM-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_SPM-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_SPM-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_SPM-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59171460 total, 41865 skipped (flags/unmapped)
Fragments: 29648807 total (29460548 tlen-paired, 2705 hash-paired, 202 singletons, 7105 discordant, 178247 orphans, 5215 too large [>5000 bp], 7359916 duplicates)
Reads: 63891934 total, 34665 skipped (flags/unmapped)
Fragments: 32016498 total (31822936 tlen-paired, 1831 hash-paired, 277 singletons, 4910 discordant, 186544 orphans, 5547 too large [>5000 bp], 7875988 duplicates)
Reads: 70558823 total, 65647 skipped (flags/unmapped)
Fragments: 35432603 total (34852469 tlen-paired, 2543 hash-paired, 296 singletons, 113249 discordant, 464046 orphans, 46156 too large [>5000 bp], 9002760 duplicates)
Reads: 70074202 total, 37813 skipped (flags/unmapped)
Fragments: 35116426 total (34882670 tlen-paired, 2003 hash-paired, 206 singletons, 7384 discordant, 224163 orphans, 13953 too large [>5000 bp], 8928197 duplicates)