Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6F6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6F6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6F6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6F6-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63074488 total, 50987 skipped (flags/unmapped)
Fragments: 31600848 total (31389973 tlen-paired, 3186 hash-paired, 292 singletons, 10672 discordant, 196725 orphans, 9411 too large [>5000 bp], 9097642 duplicates)
Reads: 67160531 total, 38397 skipped (flags/unmapped)
Fragments: 33652769 total (33447154 tlen-paired, 1919 hash-paired, 283 singletons, 7258 discordant, 196155 orphans, 6517 too large [>5000 bp], 9550248 duplicates)
Reads: 74511652 total, 43321 skipped (flags/unmapped)
Fragments: 37339752 total (37088283 tlen-paired, 2619 hash-paired, 275 singletons, 10659 discordant, 237916 orphans, 13509 too large [>5000 bp], 10878672 duplicates)
Reads: 75148361 total, 67549 skipped (flags/unmapped)
Fragments: 37723950 total (37157474 tlen-paired, 2607 hash-paired, 307 singletons, 107271 discordant, 456291 orphans, 44755 too large [>5000 bp], 10982394 duplicates)