Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_P5J-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1029_P5J-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_P5J-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_P5J-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74451733 total, 56327 skipped (flags/unmapped)
Fragments: 37289893 total (37080433 tlen-paired, 3027 hash-paired, 310 singletons, 9925 discordant, 196198 orphans, 6064 too large [>5000 bp], 10792836 duplicates)
Reads: 80004468 total, 46051 skipped (flags/unmapped)
Fragments: 40070770 total (39862282 tlen-paired, 2979 hash-paired, 394 singletons, 6564 discordant, 198551 orphans, 7911 too large [>5000 bp], 11469718 duplicates)
Reads: 88868472 total, 81926 skipped (flags/unmapped)
Fragments: 44583104 total (43995390 tlen-paired, 2136 hash-paired, 375 singletons, 112560 discordant, 472643 orphans, 46678 too large [>5000 bp], 13073597 duplicates)
Reads: 88120592 total, 51733 skipped (flags/unmapped)
Fragments: 44138751 total (43889629 tlen-paired, 3681 hash-paired, 271 singletons, 9816 discordant, 235354 orphans, 13491 too large [>5000 bp], 12937387 duplicates)