Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_9US-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_9US-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_9US-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_9US-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63732933 total, 49283 skipped (flags/unmapped)
Fragments: 31923779 total (31733642 tlen-paired, 2626 hash-paired, 298 singletons, 9455 discordant, 177758 orphans, 7074 too large [>5000 bp], 8596586 duplicates)
Reads: 68384919 total, 40441 skipped (flags/unmapped)
Fragments: 34256480 total (34065939 tlen-paired, 1891 hash-paired, 300 singletons, 6230 discordant, 182120 orphans, 6969 too large [>5000 bp], 9123879 duplicates)
Reads: 75380472 total, 45761 skipped (flags/unmapped)
Fragments: 37764601 total (37519858 tlen-paired, 4016 hash-paired, 252 singletons, 9720 discordant, 230755 orphans, 18258 too large [>5000 bp], 10315080 duplicates)
Reads: 76033386 total, 73931 skipped (flags/unmapped)
Fragments: 38148389 total (37625060 tlen-paired, 2842 hash-paired, 283 singletons, 99514 discordant, 420690 orphans, 41825 too large [>5000 bp], 10427609 duplicates)