Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7ES-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7ES-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7ES-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7ES-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71614605 total, 45295 skipped (flags/unmapped)
Fragments: 35884326 total (35657792 tlen-paired, 3344 hash-paired, 342 singletons, 7668 discordant, 215180 orphans, 8090 too large [>5000 bp], 10302468 duplicates)
Reads: 72100230 total, 46345 skipped (flags/unmapped)
Fragments: 36132849 total (35882458 tlen-paired, 2966 hash-paired, 273 singletons, 9658 discordant, 237494 orphans, 12977 too large [>5000 bp], 10667126 duplicates)
Reads: 66415205 total, 51682 skipped (flags/unmapped)
Fragments: 33279809 total (33056786 tlen-paired, 2856 hash-paired, 356 singletons, 10852 discordant, 208959 orphans, 6610 too large [>5000 bp], 9697237 duplicates)
Reads: 79654910 total, 77202 skipped (flags/unmapped)
Fragments: 39985699 total (39368052 tlen-paired, 2451 hash-paired, 342 singletons, 121518 discordant, 493336 orphans, 49994 too large [>5000 bp], 11788790 duplicates)