Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IVB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_IVB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IVB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_IVB-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70493136 total, 53092 skipped (flags/unmapped)
Fragments: 35348122 total (35063496 tlen-paired, 2365 hash-paired, 290 singletons, 10823 discordant, 271148 orphans, 7619 too large [>5000 bp], 9757879 duplicates)
Reads: 76944346 total, 45283 skipped (flags/unmapped)
Fragments: 38588069 total (38286368 tlen-paired, 2527 hash-paired, 400 singletons, 8101 discordant, 290673 orphans, 6999 too large [>5000 bp], 10426600 duplicates)
Reads: 76285642 total, 46126 skipped (flags/unmapped)
Fragments: 38262494 total (37928851 tlen-paired, 2279 hash-paired, 216 singletons, 9808 discordant, 321340 orphans, 18042 too large [>5000 bp], 10721859 duplicates)
Reads: 84311501 total, 83583 skipped (flags/unmapped)
Fragments: 42393037 total (41514394 tlen-paired, 3615 hash-paired, 436 singletons, 175316 discordant, 699276 orphans, 70778 too large [>5000 bp], 11872520 duplicates)