Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2DK-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2DK-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2DK-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2DK-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62553911 total, 40468 skipped (flags/unmapped)
Fragments: 31346808 total (31141791 tlen-paired, 2349 hash-paired, 326 singletons, 8267 discordant, 194075 orphans, 7114 too large [>5000 bp], 7624832 duplicates)
Reads: 67994484 total, 34859 skipped (flags/unmapped)
Fragments: 34074396 total (33863436 tlen-paired, 2617 hash-paired, 318 singletons, 5924 discordant, 202101 orphans, 6626 too large [>5000 bp], 8071870 duplicates)
Reads: 66997344 total, 35488 skipped (flags/unmapped)
Fragments: 33579574 total (33347625 tlen-paired, 2506 hash-paired, 221 singletons, 7453 discordant, 221769 orphans, 12349 too large [>5000 bp], 8262279 duplicates)
Reads: 74109924 total, 63574 skipped (flags/unmapped)
Fragments: 37214235 total (36610678 tlen-paired, 2371 hash-paired, 324 singletons, 119440 discordant, 481422 orphans, 49813 too large [>5000 bp], 9175275 duplicates)