Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_207-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_207-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_207-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_207-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75673635 total, 48529 skipped (flags/unmapped)
Fragments: 37912682 total (37670961 tlen-paired, 4582 hash-paired, 296 singletons, 9387 discordant, 227456 orphans, 13747 too large [>5000 bp], 8854134 duplicates)
Reads: 76439735 total, 47547 skipped (flags/unmapped)
Fragments: 38293619 total (38072220 tlen-paired, 4236 hash-paired, 386 singletons, 7729 discordant, 209048 orphans, 7192 too large [>5000 bp], 8655893 duplicates)
Reads: 70768574 total, 54335 skipped (flags/unmapped)
Fragments: 35451052 total (35232902 tlen-paired, 4382 hash-paired, 308 singletons, 10481 discordant, 202979 orphans, 7711 too large [>5000 bp], 8138641 duplicates)
Reads: 83654815 total, 76123 skipped (flags/unmapped)
Fragments: 41976671 total (41383990 tlen-paired, 4282 hash-paired, 392 singletons, 114895 discordant, 473112 orphans, 49427 too large [>5000 bp], 9819421 duplicates)