Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4OP-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4OP-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4OP-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4OP-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92116627 total, 58036 skipped (flags/unmapped)
Fragments: 46149405 total (45872452 tlen-paired, 4073 hash-paired, 343 singletons, 12785 discordant, 259752 orphans, 9938 too large [>5000 bp], 12134307 duplicates)
Reads: 99200973 total, 49545 skipped (flags/unmapped)
Fragments: 49699897 total (49420491 tlen-paired, 3494 hash-paired, 475 singletons, 8794 discordant, 266643 orphans, 9376 too large [>5000 bp], 12945671 duplicates)
Reads: 108178212 total, 60307 skipped (flags/unmapped)
Fragments: 54194623 total (53845018 tlen-paired, 5540 hash-paired, 416 singletons, 13388 discordant, 330261 orphans, 29668 too large [>5000 bp], 14546283 duplicates)
Reads: 109238292 total, 88828 skipped (flags/unmapped)
Fragments: 54827782 total (54045236 tlen-paired, 2239 hash-paired, 491 singletons, 149107 discordant, 630709 orphans, 62550 too large [>5000 bp], 14734533 duplicates)