Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_3G2-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1136_3G2-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3G2-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3G2-N1-BDNA-1_A23NMNVLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 84546686 total, 63391 skipped (flags/unmapped)
Fragments: 42348615 total (42094503 tlen-paired, 3870 hash-paired, 393 singletons, 14599 discordant, 235250 orphans, 10854 too large [>5000 bp], 13326121 duplicates)
Reads: 91122184 total, 51274 skipped (flags/unmapped)
Fragments: 45646095 total (45395980 tlen-paired, 3076 hash-paired, 434 singletons, 9851 discordant, 236754 orphans, 7954 too large [>5000 bp], 14121572 duplicates)
Reads: 91111258 total, 54886 skipped (flags/unmapped)
Fragments: 45644648 total (45350903 tlen-paired, 3132 hash-paired, 319 singletons, 12527 discordant, 277767 orphans, 22581 too large [>5000 bp], 14517806 duplicates)
Reads: 100773187 total, 88333 skipped (flags/unmapped)
Fragments: 50545787 total (49912669 tlen-paired, 1643 hash-paired, 404 singletons, 121001 discordant, 510070 orphans, 51877 too large [>5000 bp], 16120612 duplicates)